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There are 227 referenced airports for this country:
| Name | ICAO Code | IATA Code |
| Abohoy | WAKH | |
| Agats | WAKG | |
| Akimuga | WAKA | |
| Amahai | WAPA | |
| Ambon Pattimura | WAPP | AMQ |
| Arso | WAJA | |
| Atambua | WRKA | ABU |
| Babo | WASO | BXB |
| Bada | WAMQ | |
| Bade | WAKE | BXD |
| Bajawa | WRKB | BJW |
| Bali International | WADD | DPS |
| Balikpapan | WRLL | BPN |
| Banda | WAPC | |
| Banda Aceh | WITT | BTJ |
| Name | ICAO Code | IATA Code |
| Banda Aceh Maimum Saleh | WIAB | |
| Bandar Lampung | WIIT | |
| Bandung | WIIB | BDO |
| Banjarmasin | WRBB | BDJ |
| Banyumas Purwokertu | WIAP | |
| Batam | WIKB | BTH |
| Batu Lican | WRBC | |
| Batu Putih | WRLD | |
| Bau Bau | WAAB | BUW |
| Bengkalis Sungai Pakning | WIBS | |
| Bengkayang | WIOB | |
| Bengkulu | WIPL | BKS |
| Bentayan | WIPY | |
| Biak Frans Kaisiepo | WABB | BIK |
| Biak Manuhua | WABU | |
| Name | ICAO Code | IATA Code |
| Bima | WRRB | BMU |
| Bokondini | WAJB | BUI |
| Bontang | WRLC | |
| Bula | WAPB | |
| Bungo Tebo | WIPI | |
| Buntok | WRBU | |
| Cepu | WRSC | |
| Cilacap | WIIL | CXP |
| Cirebon | WIIC | CBN |
| Dobo | WAPD | |
| Dumai | WIBD | DUM |
| Enarotali | WABT | EWI |
| Ende | WRKE | ENE |
| Fak Fak | WASF | FKQ |
| Galela | WAMA | GLX |
| Name | ICAO Code | IATA Code |
| Gorontalo | WAMG | GTO |
| Gunung Sitoli | WIMB | GNS |
| Ilaga | WABL | |
| Inanwatan | WASI | INX |
| Jailolo | WAMD | |
| Jakarta Central | WIIQ | |
| Jakarta Halim Perdanakusuma | WIHH | HLP |
| Jakarta Pondok Cabe | WIIP | PCB |
| Jakarta Pulau Panjang | WIIG | |
| Jakarta Soekarno Hatta | WIII | CGK |
| Jambi Dusun Aro | WIPJ | DJB |
| Jambi Sultan Taha | WIPA | DJB |
| Jarkarta Pabelokan | WIIF | |
| Jayapura | WAJJ | DJJ |
| Kaimana | WASK | KNG |
| Name | ICAO Code | IATA Code |
| Kalabahi | WRKM | |
| Kalijati | WIIK | |
| Kao | WAMK | |
| Kebar | WASE | KEQ |
| Keluang | WIPV | |
| Kendari | WAAU | KDI |
| Kepi | WAKP | |
| Ketapang | WIOK | KTG |
| Kisaren Aek Loba | WIML | |
| Kisaren Tanah Gambus | WIMK | |
| Kiwirok | WAJK | |
| Kokonau | WABN | |
| Kolaka | WAAP | |
| Kotabaru | WRBK | |
| Kotamubagu | WAMB | |
| Name | ICAO Code | IATA Code |
| Kuala Tungkal | WIPF | |
| Kupang | WRKK | KOE |
| Labuha | WAPH | |
| Labuhan Bajo | WRKO | LBJ |
| Labuhan Bilik | WIMA | |
| Langgur | WAPL | |
| Larantuka | WRKL | LKA |
| Lereh | WAJL | LHI |
| Lhok Seumawe | WITM | |
| Lhok Sukon | WITL | |
| Long Apung | WRLP | |
| Long Bawan | WRLB | LBW |
| Long Mawang | WRLN | |
| Luwuk | WAMW | LUW |
| Madiun | WIAR | |
| Name | ICAO Code | IATA Code |
| Makale | WAAT | |
| Malang | WIAS | MLG |
| Malili | WAAI | |
| Malimpung | WAAG | |
| Malinau | WRLM | |
| Mamuju | WAAJ | |
| Manado | WAMM | MDC |
| Mangole | WAPE | MAL |
| Manokwari | WASR | MKW |
| Margahayu | WIAK | |
| Masamba | WAAM | |
| Maskolen | WRKF | |
| Matarem | WRRA | AMI |
| Maumere | WRKC | MOF |
| Mbai | WRKI | |
| Name | ICAO Code | IATA Code |
| Medan | WIMM | MES |
| Melak | WRLE | |
| Melangguane | WAMN | MNA |
| Mena | WRKJ | |
| Menggala | WIAG | |
| Merauke | WAKK | MKQ |
| Merdei | WASM | RDE |
| Meulaboh | WITC | |
| Mindiptanah | WAKD | MDP |
| Moanamani | WABD | ONI |
| Morotai | WAMR | OTI |
| Muara Badak | WRLQ | |
| Muara Wahau | WRLW | |
| Muaratewe | WRBM | |
| Muko Muko | WIPU | |
| Name | ICAO Code | IATA Code |
| Mulia | WAJM | LII |
| Nabire | WABI | NBX |
| Naikliu | WRKN | |
| Namlea | WAPR | |
| Nangapinoh | WIOG | |
| Nanukan | WRLF | |
| Natuna | WION | |
| Numfor | WABF | FOO |
| Okaba | WAKO | OKQ |
| Oksibil | WAJO | OKL |
| Ongko Asa | WRLO | |
| Padang | WIMG | PDG |
| Padang Sidempuan | WIME | |
| Palangkaraya | WRBP | PKY |
| Palembang | WIPP | PLM |
| Name | ICAO Code | IATA Code |
| Paloh | WIOH | |
| Palu | WAML | PLW |
| Pangkal Pinang | WIKK | PGK |
| Pangkalin | WRBI | PKN |
| Pekanbaru | WIBB | PKU |
| Pelabuhan Ratu | WIIR | |
| Pematang Siantar | WIMR | |
| Pendoro | WIPQ | |
| Ponggaluku | WAAL | |
| Pontianak | WIOO | PNK |
| Poso | WAMP | PSJ |
| Prapat | WIMP | |
| Primapun | WAKN | |
| Pulau Bunyu | WRLV | |
| Putusibau | WIOP | |
| Name | ICAO Code | IATA Code |
| Raha | WAAR | |
| Ransiki | WASC | |
| Rengat | WIPR | RGT |
| Rimbo Bujang | WIPC | |
| Rote | WRKR | |
| Ruteng | WRKG | RTG |
| Sabang | WIAA | SBG |
| Sabu | WRKS | |
| Samarinda | WRLS | SRI |
| Sampit | WRBS | |
| Sanana | WAPN | |
| Sangata | WRLA | |
| Sangkulirang | WRLU | |
| Sarmi | WAJI | ZRM |
| Saumlaki | WAPI | |
| Name | ICAO Code | IATA Code |
| Selaru | WAPS | |
| Semarang | WIIS | SRG |
| Semilinang | WIBP | |
| Semplak | WIAJ | |
| Senggeh | WAJS | SEH |
| Senipah | WRLY | |
| Serui | WABO | ZRI |
| Seumayam | WITS | |
| Sibolga | WIMS | |
| Sinabang | WITG | |
| Singkawang II | WIOI | |
| Singkep | WIKS | SIQ |
| Sintang | WIOS | SQC |
| Sipora | WIBR | |
| Solo | WRSQ | SOC |
| Name | ICAO Code | IATA Code |
| Soroako | WAAS | |
| Sorong | WASS | SOQ |
| Steenkol Bintuni | WASB | |
| Sumbawa | WRRS | SWG |
| Sumenep | WRST | |
| Sungai Penuh | WIPH | |
| Surabaya | WRSJ | SUB |
| Surabaya Gedangan | WRSS | SUB |
| Surabaya Perak | WRSP | |
| Tahuna | WAMH | |
| Taliabu | WAPT | |
| Tanah Grogot | WRLH | |
| Tanah Merah | WAKT | TMH |
| Tangerang | WIIA | |
| Tanjung | WRBN | |
| Name | ICAO Code | IATA Code |
| Tanjung Balai | WIBT | |
| Tanjung Bara | WRLJ | |
| Tanjung Enim | WIPE | |
| Tanjung Pandan | WIKD | TJQ |
| Tanjung Pinang | WIKN | TNJ |
| Tanjung Redep | WRLK | |
| Tanjung Santan | WRLT | |
| Tanjung Selor | WRLG | TJS |
| Tapak Tuan | WITA | |
| Taraken | WRLR | TRK |
| Tasikmalaya | WIAM | |
| Tebing Tinggi | WIMT | |
| Teluk Kepayang | WRBT | |
| Teminabuan | WAST | TXM |
| Tentena | WAMC | |
| Name | ICAO Code | IATA Code |
| Ternate | WAMT | TTE |
| Timika | WABP | TIM |
| Tiong Chong | WRLI | |
| Toli Toli | WAMI | TLI |
| Ubrub | WAJU | |
| Ujung Pandang | WAAA | UPG |
| Waghete | WABG | |
| Waikabubak | WRRT | |
| Waingapu | WRRW | WGP |
| Wakde | WAJD | |
| Wamena | WAJW | WMX |
| Waren | WABW | |
| Waris | WAJR | |
| Wasior | WASW | |
| Wuasa | WAMU | |
| Name | ICAO Code | IATA Code |
| Yogyakarta | WIIJ | JOG |
| Yogyakarta Adisucipto Int’l Airport | WAHH | JOG |
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