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There are 12 referenced airports for this country:
| Name | ICAO Code | IATA Code |
| Ali-Sabieh | HDAS | AII |
| As Eyla | HDAE | |
| Assa Guella | HDAG | |
| Chabelley | HDCH | |
| Dikhil | HDDK | |
| Djibouti-Ambouli | HDAM | JIB |
| Dorra | HDDO | |
| Herkale | HDHE | |
| Moucha | HDMO | |
| Obock | HDOB | OBC |
| Tadjourah | HDTJ | TDJ |
| Yoboki | HDYO |
